The violence erupted after stone-pelters came out on streets and threw stones at the security forces and also waved flags of Pakistan along with that of terrorist group Islamic State of Iraq and Syria (ISIS).
The protesters also attacked the police vehicle with sticks.
The protesters, who came with an intent to disrupt peace, also raised slogans soon after the prayers were over.
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The rampant incidents of stone-pelting in Jammu and Kashmir have become a matter of concern for the state administration.
Earlier in May, a tourist from Tamil Nadu's Chennai had lost his life in stone-pelting, a few days after the vehicle of a district judge from Bengaluru, who was on a holiday with his family, was pelted with stones.